HOMD ::species::Veillonella atypica

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Veillonella atypica

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Full Lineage: Bacteria; Firmicutes; Negativicutes; Veillonellales; Veillonellaceae; Veillonella; Veillonella atypica

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.016	0.006	0.089	0.276	1.094	3.194	3.181	2.504	1.761	0.005
10^thp	0.000	0.000	0.000	0.000	0.023	0.048	0.064	0.091	0.013	0.000
90^thp	0.046	0.019	0.223	0.783	3.069	7.351	6.810	6.604	4.275	0.014
Stdev	0.058	0.016	0.193	0.518	1.221	3.157	3.039	3.016	2.035	0.016
Prev	19.481	15.584	46.753	74.026	90.909	90.909	93.506	94.805	89.610	14.286

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to V. atypica, V. denticariosi, V. dispar, V. parvula, and V. rogosae were assigned one-fifth to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.797	0.753	0.281	0.574	1.169	2.319	1.553	1.414	2.010	0.007
10^thp	0.066	0.076	0.003	0.079	0.321	0.867	0.546	0.460	0.807	0.000
90^thp	2.046	1.714	0.783	1.403	2.305	3.923	2.690	2.609	3.266	0.011
Stdev	1.112	0.856	0.595	0.559	0.775	1.193	0.848	0.870	0.966	0.038
Prev	98.649	100.000	91.216	100.000	100.000	100.000	100.000	100.000	100.000	29.371

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 160, 161, and 524 were assigned one-third to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.019	0.080	0.295	0.459	0.991	0.899	2.682	1.999	1.578	0.004
10^thp	0.000	0.003	0.001	0.004	0.044	0.023	0.072	0.085	0.009	0.000
90^thp	0.038	0.130	0.431	1.825	2.255	1.597	5.834	5.295	4.753	0.001
Stdev	0.041	0.246	1.042	0.840	1.266	1.227	2.428	2.160	1.881	0.014
Prev	82.432	94.118	93.023	94.286	100.000	100.000	100.000	100.000	100.000	10.000