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16S rRNA RefSeq:
V15.23
Genomic RefSeq:
V10.1
HOMD 16S rRNA Sequence Identification
BLAST Program and Database:
Reset to Defaults
Program: BLASTN
Database Choices
:
eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 28)
eHOMD 16s rRNA RefSeq Version 15.22 (starts at pos 9)
eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 28)
eHOMD 16s rRNA RefSeq Version 14.51 (starts at pos 9)
eHOMD 16s rRNA RefSeq Version 14.51 (starts at 28 trimmed at 1407 of aligned seq)
eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 28)
eHOMD 16s rRNA RefSeq Version 13.2 (starts at pos 9)
eHOMD 16s rRNA RefSeq Extended V1.1
Upload your 16S rRNA Sequences:
Copy and paste sequence(s) below, preferably in FASTA format:
Or upload a sequence file from your computer:
**
Spamguard Code:
W
W
D
Please type in the Spamguard Code:
(case insensitive)
(
Note1
: Multiple sequences can be uploaded, please check
examples on sequence formats and restrictions.
)
(
Note2
: Current upload limit is 500 sequences or 1.5 MB filesize.)
Add Optional Blast Parameters:
Expect
:
0.0001
0.01
0.1
1
10
100
1000
Maximum Target Sequences
:
20
50
100
250
500
Other Advanced Options:
This tool identifies the closest matches of 16S rRNA sequences submitted by users among the HOMD or other 16S rRNA gene sequences. The sequence search is based on the NCBI BLASTN version 2.13.0+
[DETAIL]