HOMD ::species::Treponema sp._HMT_517

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema sp._HMT_517

Download Options

Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema sp._HMT_517

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)	No Notes

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. sp. HMT 517 and 951 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.017	0.004	0.000	0.001	0.000	0.001	0.005	0.003	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.076	0.019	0.000	0.007	0.004	0.008	0.052	0.014	0.002	0.000
Prev	9.459	6.081	0.000	3.378	1.351	4.730	4.730	7.432	0.676	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.001	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.004	0.001	0.000	0.003	0.000	0.000	0.001	0.003	0.000	0.000
Prev	5.405	2.941	0.000	2.857	0.000	2.000	9.091	6.452	0.000	0.000