HOMD ::species::Treponema sp._HMT_257

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Treponema sp._HMT_257

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Full Lineage: Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema sp._HMT_257

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.019	0.001	0.000	0.001	0.002	0.017	0.000	0.004	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.095	0.007	0.000	0.004	0.011	0.072	0.001	0.020	0.012	0.000
Prev	7.792	3.896	0.000	2.597	2.597	7.792	1.299	7.792	2.597	0.000

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to T. amylovorum and T. sp. HMT 257 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.049	0.013	0.000	0.004	0.002	0.035	0.006	0.019	0.002	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.095	0.000	0.000	0.009	0.000	0.057	0.006	0.023	0.000	0.000
Stdev	0.201	0.064	0.001	0.015	0.014	0.155	0.046	0.081	0.018	0.000
Prev	20.946	9.459	0.676	11.486	4.730	24.324	11.486	14.865	3.378	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.171	0.001	0.001	0.009	0.002	0.000	0.002	0.020	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.002	0.000	0.002	0.004	0.000	0.000
Stdev	1.458	0.006	0.003	0.039	0.009	0.001	0.007	0.096	0.001	0.000
Prev	9.459	8.824	6.977	8.571	10.714	4.000	12.121	12.903	5.000	0.000