HOMD ::species::Selenomonas sp._HMT_136

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Selenomonas sp._HMT_136

Download Options

Full Lineage: Bacteria; Firmicutes; Negativicutes; Selenomonadales; Selenomonadaceae; Selenomonas; Selenomonas sp._HMT_136

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to S. sp. HMT 136 and S. sp. HMT 149 were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.021	0.010	0.004	0.022	0.124	1.456	0.590	0.411	0.204	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.014	0.000	0.000	0.000	0.000
90^thp	0.023	0.023	0.011	0.085	0.305	4.397	1.466	1.350	0.459	0.000
Stdev	0.125	0.035	0.010	0.043	0.213	1.941	0.903	0.782	0.533	0.000
Prev	19.481	15.584	18.182	41.558	70.130	90.909	83.117	84.416	72.727	0.000

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to S. sp. HMT 136, 149, and 478 were assigned one-third to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.022	0.012	0.002	0.016	0.060	0.748	0.234	0.162	0.065	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.006	0.000	0.000	0.000	0.000
90^thp	0.053	0.031	0.000	0.040	0.184	2.374	0.582	0.479	0.191	0.000
Stdev	0.061	0.035	0.007	0.034	0.093	1.129	0.312	0.307	0.112	0.000
Prev	41.892	28.378	8.784	47.297	71.622	89.865	87.162	75.676	66.216	0.000

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.006	0.008	0.012	0.008	0.011	0.033	0.059	0.062	0.017	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.023	0.029	0.046	0.012	0.015	0.105	0.178	0.111	0.053	0.000
Stdev	0.013	0.013	0.033	0.032	0.034	0.055	0.112	0.147	0.031	0.000
Prev	36.486	50.000	34.884	34.286	57.143	74.000	81.818	77.419	60.000	0.000