HOMD ::species::Prevotella sp._HMT_306

HOME
Taxonomy
Genomes
Proteomes
- View Genomic Tree based on Conserved Proteins
- All Protein Sequences Annotated from Genomes
16S rRNA Microbiome
Animal Microbiomes
- Mouse (MOMD)
Downloads
- Download Batch HOMD Data
- HOMD FTP Site
Resources
HOMD-v2
[Page-Help]

16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Prevotella sp._HMT_306

Download Options

Full Lineage: Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella sp._HMT_306

^th

^th

^th

^th

From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to P. sp. HMT 306 and P. sp. HMT 314 were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.004	0.001	0.001	0.021	0.112	0.121	0.276	0.284	0.120	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.007	0.000	0.000	0.083	0.347	0.365	0.737	0.407	0.358	0.000
Stdev	0.017	0.004	0.005	0.053	0.199	0.180	0.461	1.217	0.169	0.002
Prev	11.688	2.597	6.494	25.974	62.338	61.039	68.831	59.740	70.130	1.299

From: Eren et al.(2014) (V3-V5)

Notes:

Reads equally close to P. histicola and P. sp. HMT 306 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.025	0.018	0.021	0.239	0.607	1.067	1.324	1.060	1.055	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.016	0.013	0.050	0.323	1.483	2.809	3.199	2.502	2.728	0.000
Stdev	0.137	0.133	0.073	0.739	1.188	2.021	1.848	1.589	1.650	0.001
Prev	16.892	14.189	25.000	59.459	79.054	84.459	86.486	83.108	81.081	1.399

From: Dewhirst 35x9 data (not published yet)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.025	0.025	0.080	0.065	0.197	0.445	1.011	1.340	0.839	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.036	0.005	0.002	0.000
90^thp	0.030	0.037	0.223	0.165	0.455	0.842	2.340	1.764	0.927	0.000
Stdev	0.082	0.103	0.258	0.119	0.332	1.271	1.378	3.250	2.464	0.000
Prev	45.946	44.118	60.465	74.286	82.143	86.000	96.970	93.548	90.000	0.000