HOMD ::species::Haemophilus paraphrohaemolyticus

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16S rRNA RefSeq: V15.23 Genomic RefSeq: V10.1

Species: Haemophilus paraphrohaemolyticus

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Full Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus paraphrohaemolyticus

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.007	0.002	0.490	0.074	0.113	0.042	0.042	0.091	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.011	0.008	1.446	0.165	0.194	0.091	0.105	0.233	0.000	0.000
Stdev	0.037	0.007	1.076	0.170	0.547	0.135	0.118	0.268	0.012	0.000
Prev	16.883	15.584	57.143	55.844	53.247	31.169	32.468	38.961	9.091	0.000

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	STO
Avg	0.117	0.107	2.784	0.506	0.745	0.239	0.106	0.061	0.012	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.260	0.190	11.405	1.161	2.733	0.661	0.271	0.185	0.021	0.000
Stdev	0.510	0.694	6.650	1.628	1.818	0.688	0.367	0.219	0.047	0.000
Prev	26.351	29.054	39.865	37.162	37.162	35.811	29.054	27.703	15.541	0.000

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 035 and 945 were assigned half to each taxon.

percent abundance

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	ANA
Avg	0.005	0.021	0.564	0.117	0.101	0.029	0.527	0.472	0.024	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.013	0.007	0.820	0.346	0.255	0.047	1.061	1.714	0.020	0.000
Stdev	0.014	0.113	2.092	0.232	0.213	0.096	1.408	1.074	0.104	0.000
Prev	37.838	23.529	53.488	74.286	64.286	50.000	57.576	64.516	35.000	0.000