Genome Explorer: Lactobacillus salivarius cp400 (SEQF2628.1)
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NCBI Annotation for SEQF2628.1
| Genome selected: Lactobacillus salivarius cp400 | |||
| Contigs: | 89 | Bases: | 2156840 bps |
| CDS: | 87 | rRNA: | 0 |
| tmRNA: | 0 | tRNA: | 0 |
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| # | Molecule | PID | Genome Viewer |
NA (Length)(Seq) |
AA (Length)(Seq) |
Range | Gene | Gene Product |
|---|---|---|---|---|---|---|---|---|
| 2001 | CBVR010000053.1 | CDK36230.1 | open | 201 [NA] | 66 [AA] | 4410-4610 | LSCP400_20601 | FIG00753478: hypothetical protein |
| 2002 | CBVR010000053.1 | CDK36231.1 | open | 1599 [NA] | 532 [AA] | 4722-6320 | LSCP400_20611 | CTP synthase (UTP--ammonia ligase) (CTP synthetase) |
| 2003 | CBVR010000053.1 | CDK36232.1 | open | 627 [NA] | 208 [AA] | 6495-7121 | LSCP400_20621 | Probable DNA-directed RNA polymerase subunit delta (RNAP delta factor) |
| 2004 | CBVR010000053.1 | CDK36233.1 | open | 438 [NA] | 145 [AA] | 7131-7568 | LSCP400_20631 | FIG00743387: hypothetical protein |
| 2005 | CBVR010000053.1 | CDK36234.1 | open | 669 [NA] | 222 [AA] | 7670-8338 | LSCP400_20641 | contains glutamine amidotransferase class-I domain |
| 2006 | CBVR010000054.1 | CDK36237.1 | open | 333 [NA] | 110 [AA] | 503-835 | LSCP400_20681 | Transposase ISLasa4k, ISL3 family |
| 2007 | CBVR010000054.1 | CDK36238.1 | open | 177 [NA] | 58 [AA] | 1024-1200 | LSCP400_20691 | LSU ribosomal protein L32p |
| 2008 | CBVR010000054.1 | CDK36239.1 | open | 546 [NA] | 181 [AA] | 1283-1828 | LSCP400_20701 | COG1399 protein in cluster with ribosomal protein L32p, Firmicutes subfamily |
| 2009 | CBVR010000054.1 | CDK36240.1 | open | 1143 [NA] | 380 [AA] | 1905-3047 | LSCP400_20711 | UPF0348 protein |
| 2010 | CBVR010000054.1 | CDK36241.1 | open | 735 [NA] | 244 [AA] | 3063-3797 | LSCP400_20721 | FIG145533: Methyltransferase |
| 2011 | CBVR010000054.1 | CDK36242.1 | open | 354 [NA] | 117 [AA] | 3799-4152 | LSCP400_20731 | Iojap protein |
| 2012 | CBVR010000054.1 | CDK36243.1 | open | 600 [NA] | 199 [AA] | 4175-4774 | LSCP400_20741 | Hydrolase (HAD superfamily), YqeK |
| 2013 | CBVR010000054.1 | CDK36244.1 | open | 633 [NA] | 210 [AA] | 4767-5399 | LSCP400_20751 | Nicotinate-nucleotide adenylyltransferase ## bacterial NadD family |
| 2014 | CBVR010000054.1 | CDK36245.1 | open | 312 [NA] | 103 [AA] | 5418-5729 | LSCP400_20761 | FIG004454: RNA binding protein |
| 2015 | CBVR010000054.1 | CDK36246.1 | open | 1122 [NA] | 373 [AA] | 5751-6872 | LSCP400_20771 | GTP-binding protein |
| 2016 | CBVR010000054.1 | CDK36247.1 | open | 540 [NA] | 179 [AA] | 6859-7398 | LSCP400_20781 | Hydrolase, haloacid dehalogenase-like family |
| 2017 | CBVR010000055.1 | CDK36250.1 | open | 1608 [NA] | 535 [AA] | 545-2152 | LSCP400_20801 | Amino acid permease |
| 2018 | CBVR010000055.1 | CDK36251.1 | open | 1236 [NA] | 411 [AA] | 2464-3699 | LSCP400_20811 | Aminopeptidase S (Leu, Val, Phe, Tyr preference) |
| 2019 | CBVR010000055.1 | CDK36252.1 | open | 1143 [NA] | 380 [AA] | 3825-4967 | LSCP400_20821 | UDP-N-acetylglucosamine 2-epimerase |
| 2020 | CBVR010000055.1 | CDK36253.1 | open | 795 [NA] | 264 [AA] | 5139-5933 | LSCP400_20831 | Transcriptional regulator |
| 2021 | CBVR010000055.1 | CDK36254.1 | open | 528 [NA] | 175 [AA] | 5951-6478 | LSCP400_20841 | FIG00629859: hypothetical protein |
| 2022 | CBVR010000055.1 | CDK36255.1 | open | 1218 [NA] | 405 [AA] | 6545-7762 | LSCP400_20851 | putative transposase |
| 2023 | CBVR010000056.1 | CDK36257.1 | open | 615 [NA] | 204 [AA] | 655-1269 | LSCP400_20871 | ADP-ribose pyrophosphatase |
| 2024 | CBVR010000056.1 | CDK36258.1 | open | 165 [NA] | 54 [AA] | 1351-1515 | LSCP400_20881 | hypothetical protein' EIVINGDYL' |
| 2025 | CBVR010000056.1 | CDK36259.1 | open | 3024 [NA] | 1007 [AA] | 1676-4699 | LSCP400_20891 | Type I restriction-modification system, restriction subunit R |
| 2026 | CBVR010000056.1 | CDK36260.1 | open | 1596 [NA] | 531 [AA] | 4717-6312 | LSCP400_20901 | Type I restriction-modification system, DNA-methyltransferase subunit M |
| 2027 | CBVR010000057.1 | CDK36263.1 | open | 1278 [NA] | 425 [AA] | 496-1773 | LSCP400_20941 | Transposase ISLasa9b, IS200-IS605 family |
| 2028 | CBVR010000057.1 | CDK36264.1 | open | 234 [NA] | 77 [AA] | 2157-2390 | LSCP400_20951 | Copper chaperone |
| 2029 | CBVR010000057.1 | CDK36265.1 | open | 1905 [NA] | 634 [AA] | 2709-4613 | LSCP400_20961 | Copper-translocating P-type ATPase |
| 2030 | CBVR010000057.1 | CDK36266.1 | open | 276 [NA] | 91 [AA] | 4854-5129 | LSCP400_20971 | conserved hypothetical protein |
| 2031 | CBVR010000057.1 | CDK36267.1 | open | 828 [NA] | 275 [AA] | 5204-6031 | LSCP400_20981 | Transposase ISLasa15, IS3 family |
| 2032 | CBVR010000057.1 | CDK36268.1 | open | 333 [NA] | 110 [AA] | 6492-6824 | LSCP400_20991 | putative transposase |
| 2033 | CBVR010000058.1 | CDK36269.1 | open | 1122 [NA] | 373 [AA] | 497-1618 | LSCP400_21001 | Transposase |
| 2034 | CBVR010000058.1 | CDK36270.1 | open | 1533 [NA] | 510 [AA] | 1893-3425 | LSCP400_21011 | Lysyl-tRNA synthetase (class II) |
| 2035 | CBVR010000058.1 | CDK36271.1 | open | 993 [NA] | 330 [AA] | 3519-4511 | LSCP400_21021 | tRNA-dihydrouridine synthase |
| 2036 | CBVR010000058.1 | CDK36272.1 | open | 891 [NA] | 296 [AA] | 4529-5419 | LSCP400_21031 | Chaperonin (heat shock protein 33) |
| 2037 | CBVR010000058.1 | CDK36273.1 | open | 461 [NA] | [AA] | 5649->6109 | LSCP400_21041 | putative transposase |
| 2038 | CBVR010000059.1 | CDK36274.1 | open | 135 [NA] | [AA] | 503-637 | LSCP400_21051 | phage protein |
| 2039 | CBVR010000059.1 | CDK36275.1 | open | 126 [NA] | 41 [AA] | 679-804 | LSCP400_21061 | hypothetical protein |
| 2040 | CBVR010000059.1 | CDK36276.1 | open | 2535 [NA] | 844 [AA] | 1263-3797 | LSCP400_21071 | Lysyl aminopeptidase |
| 2041 | CBVR010000059.1 | CDK36277.1 | open | 132 [NA] | 43 [AA] | 4128-4259 | LSCP400_21081 | hypothetical protein |
| 2042 | CBVR010000059.1 | CDK36278.1 | open | 1218 [NA] | 405 [AA] | 4418-5635 | LSCP400_21091 | hypothetical protein |
| 2043 | CBVR010000060.1 | CDK36279.1 | open | 888 [NA] | 295 [AA] | 33-920 | LSCP400_21101 | Transposase |
| 2044 | CBVR010000060.1 | CDK36280.1 | open | 3777 [NA] | 1258 [AA] | 1307-5083 | LSCP400_21111 | MucBP mucin binding domain protein with YSIRK signal peptide |
| 2045 | CBVR010000061.1 | CDK36282.1 | open | 888 [NA] | 295 [AA] | 4469-5356 | LSCP400_21131 | Transposase |
| 2046 | CBVR010000062.1 | CDK36284.1 | open | 1353 [NA] | 450 [AA] | 585-1937 | LSCP400_21151 | Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) |
| 2047 | CBVR010000062.1 | CDK36285.1 | open | 2133 [NA] | 710 [AA] | 2218-4350 | LSCP400_21161 | Lipoteichoic acid synthase LtaS Type IIb |
| 2048 | CBVR010000062.1 | CDK36286.1 | open | 459 [NA] | 152 [AA] | 4448-4906 | LSCP400_21171 | putative transposase |
| 2049 | CBVR010000063.1 | CDK36287.1 | open | 333 [NA] | 110 [AA] | 211-543 | LSCP400_21181 | putative transposase |
| 2050 | CBVR010000063.1 | CDK36288.1 | open | 657 [NA] | 218 [AA] | 680-1336 | LSCP400_21191 | DinG family ATP-dependent helicase CPE1197 |
| 2051 | CBVR010000063.1 | CDK36289.1 | open | 1719 [NA] | 572 [AA] | 1330-3048 | LSCP400_21201 | DinG family ATP-dependent helicase CPE1197 |
| 2052 | CBVR010000063.1 | CDK36290.1 | open | 1232 [NA] | [AA] | 3555->4786 | LSCP400_21211 | putative adhesin cell surface protein |
| 2053 | CBVR010000064.1 | CDK36291.1 | open | 981 [NA] | 326 [AA] | 31-1011 | LSCP400_21221 | Phage minor head protein |
| 2054 | CBVR010000064.1 | CDK36292.1 | open | 510 [NA] | 169 [AA] | 1019-1528 | LSCP400_21231 | Phage major tail protein |
| 2055 | CBVR010000064.1 | CDK36293.1 | open | 453 [NA] | 150 [AA] | 1534-1986 | LSCP400_21241 | conserved hypothetical protein |
| 2056 | CBVR010000064.1 | CDK36294.1 | open | 393 [NA] | 130 [AA] | 2004-2396 | LSCP400_21251 | conserved hypothetical protein |
| 2057 | CBVR010000064.1 | CDK36295.1 | open | 405 [NA] | 134 [AA] | 2408-2812 | LSCP400_21261 | hypothetical protein |
| 2058 | CBVR010000064.1 | CDK36296.1 | open | 165 [NA] | 54 [AA] | 2814-2978 | LSCP400_21271 | hypothetical protein |
| 2059 | CBVR010000065.1 | CDK36298.1 | open | 981 [NA] | 326 [AA] | 31-1011 | LSCP400_21291 | putative phage related protein |
| 2060 | CBVR010000065.1 | CDK36299.1 | open | 510 [NA] | 169 [AA] | 1019-1528 | LSCP400_21301 | Phage major tail protein |
| 2061 | CBVR010000065.1 | CDK36300.1 | open | 453 [NA] | 150 [AA] | 1534-1986 | LSCP400_21311 | putative phage related protein |
| 2062 | CBVR010000065.1 | CDK36301.1 | open | 393 [NA] | 130 [AA] | 2004-2396 | LSCP400_21321 | conserved hypothetical protein |
| 2063 | CBVR010000065.1 | CDK36302.1 | open | 360 [NA] | 119 [AA] | 2408-2767 | LSCP400_21331 | hypothetical protein |
| 2064 | CBVR010000065.1 | CDK36303.1 | open | 165 [NA] | 54 [AA] | 2769-2933 | LSCP400_21341 | Xkdx family phage related protein |
| 2065 | CBVR010000067.1 | CDK36306.1 | open | 483 [NA] | 160 [AA] | 500-982 | LSCP400_21371 | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake |
| 2066 | CBVR010000067.1 | CDK36307.1 | open | 699 [NA] | 232 [AA] | 1131-1829 | LSCP400_21381 | Mobile element protein |
| 2067 | CBVR010000067.1 | CDK36308.1 | open | 888 [NA] | 295 [AA] | 2379-3266 | LSCP400_21391 | putative transposase |
| 2068 | CBVR010000068.1 | CDK36309.1 | open | 210 [NA] | [AA] | 63-272 | LSCP400_21401 | putative transposase, partial |
| 2069 | CBVR010000068.1 | CDK36310.1 | open | 978 [NA] | 325 [AA] | 884-1861 | LSCP400_21411 | bile salt hydrolase |
| 2070 | CBVR010000070.1 | CDK36313.1 | open | 123 [NA] | 40 [AA] | 767-889 | LSCP400_21451 | hypothetical protein |
| 2071 | CBVR010000070.1 | CDK36314.1 | open | 1218 [NA] | 405 [AA] | 1064-2281 | LSCP400_21461 | Transposase ISLasa12, IS607 family |
| 2072 | CBVR010000071.1 | CDK36316.1 | open | 918 [NA] | 305 [AA] | 702-1619 | LSCP400_21481 | Integrase |
| 2073 | CBVR010000074.1 | CDK36319.1 | open | 474 [NA] | 157 [AA] | 1012-1485 | LSCP400_21521 | putative phage protein |
| 2074 | CBVR010000075.1 | CDK36320.1 | open | 474 [NA] | 157 [AA] | 322-795 | LSCP400_21531 | putative phage protein |
| 2075 | CBVR010000075.1 | CDK36321.1 | open | 150 [NA] | 49 [AA] | 1032-1181 | LSCP400_21541 | hypothetical protein |
| 2076 | CBVR010000082.1 | CDK36325.1 | open | 132 [NA] | [AA] | 24-155 | LSCP400_21581 | DNA methylase subunit M |
| 2077 | CBVR010000082.1 | CDK36326.1 | open | 201 [NA] | 66 [AA] | 120-320 | LSCP400_21591 | DNA methylase subunit M |
| 2078 | CBVR010000082.1 | CDK36327.1 | open | 159 [NA] | 52 [AA] | 378-536 | LSCP400_21601 | DNA methylase |
| 2079 | CBVR010000082.1 | CDK36328.1 | open | 128 [NA] | [AA] | 625->752 | LSCP400_21611 | DNA methylase subunit M |
| 2080 | CBVR010000086.1 | CDK36332.1 | open | 228 [NA] | 75 [AA] | 111-338 | LSCP400_21671 | hypothetical protein |